extract_object_stats_csv
- FeatureExtractor.extract_object_stats_csv(obs=None, features=None, clusters=None)[source]
Extract csv files of object stats.
Saves csv as
export/object_stats_{self.fname}.csv.- Parameters
obs (
Optional[Iterable[str]]) – column names from metadata.csv that should be additionally stored.clusters (
Optional[Iterable[str]]) – List of cluster names for which pairwise co_occurrence scores should be calculatedfeatures (
Optional[Iterable[str]]) – List of features to display. Must be columns ofadata.obsm['object_stats_agg']. If None, all features are displayed.clusters – List of clusters to display. Must be columns of
adata.obsm['object_stats_agg']. If None, all clusters are displayed.
- Return type