extract_co_occurrence_csv

FeatureExtractor.extract_co_occurrence_csv(obs=None, clusters=None)[source]

Extract csv files of co_occurrence scores for every cluster-cluster pair.

Data will contain obj_id, co_occurrence scores at each distance interval for every cluster-cluster pair. Saves csv as export/co_occurrence_{cluster1}_{cluster2}_{self.fname}.csv.

Parameters

  • obs (Optional[Iterable[str]]) – column names from metadata.csv that should be additionally stored.

  • clusters (Optional[Iterable[str]]) – List of cluster names for which pairwise co_occurrence scores should be calculated

Return type

None