campa.pl.plot_object_stats

plot_object_stats(adata, group_key, features=None, clusters=None, figsize_mult=(2, 2), **kwargs)

Barplot of object statistics.

Parameters

• adata – Adata containing object statistics in adata.obsm['object_stats_agg']. E.g. result of FeatureExtractor.get_object_stats().

• group_key – Categorical value in adata.obs to group by.

• features – List of features to display. Must be columns of adata.obsm['object_stats_agg']. If None, all features are displayed.

• clusters – List of clusters to display. Must be columns of adata.obsm['object_stats_agg']. If None, all clusters are displayed.

• kwargs – Keyword arguments passed to sns.boxplot().