campa.pl.plot_co_occurrence

plot_co_occurrence(adata, cluster1, cluster2, condition, condition_values=None, ax=None, **kwargs)[source]

Plot co-occurrence for one cluster-cluster pairs.

Parameters

  • adata (AnnData) – Adata containing co-occurrence scores in adata.obsm['co_occurrence_{cluster1}_{cluster2}'].

  • cluster1 (str) – Cluster name.

  • cluster2 (str) – Cluster name.

  • condition (str) – Categorical condition to group obs in adata by. Must be a column in adata.obs.

  • condition_values (Optional[Iterable[str]]) – Limit condition groups to specified values. Default are all condition groups.

  • ax (Optional[Axes]) – Axis to plot on. If None, a new axis is created.

  • kwargs (Any) – Passed to seaborn.lineplot().

Return type

Nothing, just plots co-occurrence score.