add_cluster_colors

Cluster.add_cluster_colors(colors, from_col=None)[source]

Add colours to clustering or to annotation.

Adds column {from_col}_colors to Cluster.cluster_annotation and saves it to {cluster_name}_annotation.csv.

Parameters

colors (Mapping[str, str] | None) – Colour dict, mapping from unique clustering values from from_col to hex colours. Default is using tab20 colormap.
from_col (str | None) – Optionally set clustering name for which to add colours. Default is cluster_name.

Return type

None