add_cluster_annotation

Cluster.add_cluster_annotation(annotation, to_col, from_col=None, colors=None)

Add annotation and colormap to clustering.

Is saved in {cluster_name}_annotation.csv

Parameters

• annotation (Mapping[str, str]) – Dict mapping from values of from_col to the annotation.

• to_col (str) – Name under which the annotation should be saved.

• from_col (str | None) – Optionally set the annotation name from which to annotate. Default is cluster_name.

• colors (Mapping[str, str] | None) – Colour dict, mapping from annotations to hex colours. Default is using tab20 colormap.

Return type

None