get_object_imgs

MPPData.get_object_imgs(data='mpp', channel_ids=None, annotation_kwargs=None, **kwargs)

Return images for each obj_id in current data.

Parameters

• data (str) – Key in MPPData.data() that should be plotted on the image.

• channel_ids (Optional[Iterable[int]]) – Only if key == ‘mpp’. Channels that the image should have. If None, all channels are returned.

• annotation_kwargs (Optional[Mapping[str, Any]]) – Arguments for campa.pl.annotate_img() (annotation, to_col, color). Use this to plot clusterings on cells with custom colormaps.

• img_size – Size of returned image. If None, images have minimal required size to fit all information. If None, offset information is returned by this function.

• pad – Amount of padding added to returned image (only used when img_size is None).

Return type

list of images.