get_cluster_annotation

Experiment.get_cluster_annotation(cluster_name='clustering', cluster_dir=None)[source]

Read cluster_annotation file for full data from disk.

Looks for file {cluster_name}_annotation.csv in cluster_dir. If cluster_dir is None, is is set to the first dir of aggregated/sub-*.

Parameters

  • cluster_name (str) – Name of clustering.

  • cluster_dir (Optional[str]) – Directory in which to find the clustering.

Return type

The cluster annotation file.